Plenty of small business owners get through several years on Xero and good intentions before anything goes wrong. Then a BAS gets lodged three weeks late, an asset purchase misses a deadline by a fortnight, or a quarterly super payment lands a day after it was due. None of it feels like a big deal at the time.The problem is that 2025-26 has made all three of those mistakes more expensive than they used to be. A few rule changes have quietly raised the cost of going without proper advice, and most business owners won't notice until the bill turns up.

Three things shifted this financial year, and together they raise the real cost of getting compliance wrong. None of them is dramatic on their own, but they stack.From 1 July 2025, the ATO's general interest charge (GIC) stopped being tax deductible. GIC currently runs at over 11% a year, updated quarterly, and it compounds daily on whatever you owe. Losing the deduction means the effective cost of carrying ATO debt is meaningfully higher than it was two years ago, even though the headline rate looks similar.Late lodgement penalties haven't changed in structure, but they still catch people out. A small business that lodges a BAS or return late faces $330 for every 28 days overdue, capped at $1,650 for a small entity. That's before any GIC starts accruing on the unpaid amount underneath it.
A good accountant's real value isn't doing arithmetic you could technically do yourself. It's flagging the things that are easy to miss and expensive to miss, before the deadline passes, rather than after.Small businesses with turnover under $10 million can claim an immediate deduction for eligible assets under $20,000, but only if the asset is first used or installed ready for use by 30 June 2026 to qualify for 2025-26. Note that the Government has proposed making the $20,000 threshold permanent from 1 July 2026, though that measure is not yet law. This is the kind of timing call that's genuinely hard to manage alone while running the rest of a business. Working with a registered small business accountant and tax agent means someone is watching these dates against your actual purchasing and cash flow, not just reminding you they exist.Unpaid tax debtIf you have unpaid tax debt, the General Interest Charge (GIC) compounds daily on the outstanding balance, causing the amount you owe to grow over time. From 1 July 2025, GIC is no longer tax-deductible, making tax debt more expensive to carry.Late BAS or tax returnLodging your Business Activity Statement (BAS) or tax return late can result in penalties of $330 for every 28 days the document remains overdue, up to a maximum of $1,650. While the penalty structure has not changed for 2025-26, the daily compounding GIC can significantly increase the total cost of late payment.Asset purchasesDelaying eligible asset purchases by even a few days can mean missing out on valuable tax deductions. For the 2025-26 financial year, the $20,000 instant asset write-off threshold applies only to assets that are purchased, and first used or installed ready for use by 30 June 2026.SuperannuationPaying employee superannuation late can trigger the Superannuation Guarantee Charge, which is generally more expensive than making contributions on time. The Superannuation Guarantee rate is now 12%, and from 1 July 2026, employers will also need to comply with the new payday super requirements.
The superannuation guarantee rate reached 12% of ordinary time earnings on 1 July 2025, the final step in a rise that started years ago. There's no further increase legislated, but the bigger change is about timing, not the rate itself.
From 1 July 2026, employers must to pay super contributions at the same time as wages, rather than waiting for the old quarterly cycle. For a business still running quarterly payroll processes, that's a system change that needs to happen now, not a future planning item.
Miss a super payment, and the Superannuation Guarantee Charge applies instead of the contribution itself. It includes a flat $20 administration fee per employee per quarter, plus nominal interest, and, unlike a normal super contribution, none of it is tax-deductible.
It's almost never a single penalty that hurts. It's a late BAS, with GIC accruing on the unpaid GST underneath it, while a missed asset purchase deadline costs a deduction that won't come back until next financial year. Each one is manageable. Together, on top of running the actual business, they add up to a genuinely bad quarter.A professional accountant's job is to make sure none of these things compounds in the background while you're focused on customers and cash flow. If you've been putting off the conversation, the instant asset write-off deadline and the payday super changeover both land within days of each other this year, which makes now a reasonable time to stop putting it off.